Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_49967479_49977547_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49967479 - 49977547

Intron Length:

10069

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTATGTATC

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTTTTAAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAC

U12 Branch Point Sequence:

CTTTTTTTAAAG

Flanking Amino Acid:

DYLKGLSIIGVQQIDRVVEV

Intron Amino Acid Position:

183

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

77.9

36.9

Major BPS

81.4

0.78

0.9

71.3

36.7

Major PPT

83.5

0.75

0.9

85.6

26.4

Minor 5ss

45.9

-0.4

2.5

54.6

42.8

Minor BPS

65.7

0.35

1.5

67.62

40.4

Associated Gene:

Gene:

CDKAL1

Ensembl Gene ID:

ENSAPLG00000005820

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024180

49625294 - 50106635

481342

ENSAPLT00000020209

49630486 - 50106635

476150

ENSAPLT00000006034

49621502 - 50106635

485134

ENSAPLT00000029326

49713986 - 50106635

392650

ENSAPLT00000029323

49691326 - 50106635

415310