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Intron Name: Anas_platyrhynchos_platyrhynchos_2_49977645_50036853_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49977645 - 50036853

Intron Length:

59209

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTTGA

5'SS Class:

strong_major

3'SS Sequence:

CTGTCTTCTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTAAC

U12 Branch Point Sequence:

AAAATACTAACA

Flanking Amino Acid:

PAEDHFRNSIKKAQEGNKKV

Intron Amino Acid Position:

150

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

77.8

33.2

Major BPS

76.8

0.67

0.9

75.9

Major PPT

78.9

0.65

0.8

77.5

31.3

Minor 5ss

41.3

-1

2.8

49.5

41.2

Minor BPS

45.3

-0.3

1.8

54.96

36.4

Associated Gene:

Gene:

CDKAL1

Ensembl Gene ID:

ENSAPLG00000005820

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020209

49630486 - 50106635

476150

ENSAPLT00000006034

49621502 - 50106635

485134

ENSAPLT00000029326

49713986 - 50106635

392650

ENSAPLT00000029323

49691326 - 50106635

415310

ENSAPLT00000024180

49625294 - 50106635

481342