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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_50101633_50103887_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50101633 - 50103887
Intron Length:
2255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTACTTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTCTACTTGACA
Flanking Amino Acid:
TQTDDDPPSDSIIPGVQKIW
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
28
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
76
0.59
1
72.2
37.6
Minor 5ss
42.2
-0.9
2.9
59.5
45
Minor BPS
72.1
0.69
1.5
79.6
36.4

Associated Gene:

Gene:
CDKAL1
Ensembl Gene ID:
ENSAPLG00000005820
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024180
49625294 - 50106635
481342
ENSAPLT00000020209
49630486 - 50106635
476150
ENSAPLT00000006034
49621502 - 50106635
485134
ENSAPLT00000029326
49713986 - 50106635
392650
ENSAPLT00000029323
49691326 - 50106635
415310