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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_50113139_50113185_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
50113139 - 50113185
Intron Length:
47

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAT|GCCAAGCTT
5'SS Class:
weak_major
3'SS Sequence:
CTCAGTGGGTTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCATATTTATCT
Flanking Amino Acid:
CGFFPLWKTLIFLCLQLFII
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57
0.17
1.3
64.7
39.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
50.4
0.01
1.1
49.5
43.8
Minor 5ss
23.6
-3
4.3
43.3
44.1
Minor BPS
56.3
0.28
1.8
73.5
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027613
50113039 - 50117389
4351