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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_50118068_50120702_R

Intron Information:

Intron Rank:
3
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
50118068 - 50120702
Intron Length:
2635

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
GAG|ATATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TAACAGTGATTAC|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
AATTCCTTAACA
Flanking Amino Acid:
KLLTEDSENQRLAYVTYQDI
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
38.4
-0.7
3.5
62.3
44.7
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
32.5
-1
3.1
40.5
43.1
Minor 5ss
100
1.66
0.5
100
0
Minor BPS
87.8
1.18
0.9
87.56
29.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005846
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006043
50114044 - 50123761
9718