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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_50120862_50121435_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50120862 - 50121435
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGGGTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
CAAATGTCAAAA
Flanking Amino Acid:
MGCSLSEDGG
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
75.6
0.58
0.9
69.5
41.6
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
38.8
-0.8
2.1
43.43
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005846
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006043
50114044 - 50123761
9718