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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_50121656_50123649_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
50121656 - 50123649
Intron Length:
1994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGGAA
5'SS Class:
major
3'SS Sequence:
CTCTCTCTCCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTCTTCATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
72.1
33
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
68.6
0.42
1
67
33.1
Minor 5ss
30.2
-2.3
3.5
37.5
41.7
Minor BPS
66.8
0.61
1.8
88.14
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005846
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006043
50114044 - 50123761
9718