Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5015230_5016030_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5015230 - 5016030

Intron Length:

801

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTAGTAGG

5'SS Class:

strong_major

3'SS Sequence:

CACCCCCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTTAA

U12 Branch Point Sequence:

TTTAAGAGAATT

Flanking Amino Acid:

TITWKKSASKEGKISRDRQV

Intron Amino Acid Position:

123

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

1.1

73.9

42.7

Major BPS

72.1

0.55

1.1

63.7

43.9

Major PPT

65.1

0.34

0.8

26.8

Minor 5ss

31.5

-2.1

2.4

34.7

Minor BPS

41.5

-0.5

2.4

67.92

42.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000000980

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018217

4976564 - 5016398

39835