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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_50226959_50228315_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50226959 - 50228315
Intron Length:
1357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAG
U12 Branch Point Sequence:
TTCCTCTTCACA
Flanking Amino Acid:
WNIQTAAWLKRVCYDRAPWY
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
67.4
44
Major BPS
68.2
0.45
1.5
77.7
37.1
Major PPT
84
0.76
0.7
79.2
26.4
Minor 5ss
32.6
-2
3.2
41
45.3
Minor BPS
60.7
0.33
1.8
72.02
40.3

Associated Gene:

Gene:
MBOAT1
Ensembl Gene ID:
ENSAPLG00000005879
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019657
50177396 - 50232275
54880
ENSAPLT00000006114
50177396 - 50230458
53063