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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_50229823_50231882_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50229823 - 50231882
Intron Length:
2060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
AAAAATATAATA
Flanking Amino Acid:
LAVEPTVKFYKSMYFHMHIL
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
27.2
Major BPS
79
0.72
1
78.4
31.2
Major PPT
83.4
0.75
0.8
76.8
37.4
Minor 5ss
44.5
-0.6
2.8
60
38.4
Minor BPS
44.7
-0.4
1.7
50.97
33.2

Associated Gene:

Gene:
MBOAT1
Ensembl Gene ID:
ENSAPLG00000005879
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019657
50177396 - 50232275
54880