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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_50280407_50301683_F

Intron Information:

Intron Rank:
136779
Intron Class:
major
Intron Phase:
Intron Coordinates:
50280407 - 50301683
Intron Length:
21277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGTA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
AAATCTCAAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
75.2
35.1
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
84.8
0.78
0.7
79.2
26.4
Minor 5ss
32.6
-2
3.7
46.4
48.9
Minor BPS
48
-0.1
1.9
59.66
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023676
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023805
50279944 - 50302497
22554