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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_50354056_50355334_F

Intron Information:

Intron Rank:
150371
Intron Class:
major
Intron Phase:
Intron Coordinates:
50354056 - 50355334
Intron Length:
1279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
TTATTCCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCTGATGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.2
38.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
74.8
0.56
0.9
68.1
38.5
Minor 5ss
35.7
-1.6
2.9
46.8
42.6
Minor BPS
46.7
-0.1
2.2
67.74
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030816
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040327
50351136 - 50355560
4425