About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_50356021_50359917_F

Intron Information:

Intron Rank:
150368
Intron Class:
major
Intron Phase:
Intron Coordinates:
50356021 - 50359917
Intron Length:
3897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTGTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATTTCTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
71.3
0.48
0.9
69.5
36.8
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
75.8
0.89
1.5
90.23
33.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030816
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019190
50351136 - 50360015
8880