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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_50405757_50504332_F

Intron Information:

Intron Rank:
142630
Intron Class:
major
Intron Phase:
Intron Coordinates:
50405757 - 50504332
Intron Length:
98576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGCAC
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCACAT
U12 Branch Point Sequence:
TCTGCCATAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
59
39.9
Major BPS
68.9
0.47
1
75
30
Major PPT
93.4
0.98
0.7
92.3
26.6
Minor 5ss
36.5
-1.5
3.4
49.6
47
Minor BPS
52.1
-0
1.9
61.5
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026868
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039421
50405620 - 50505981
100362