Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_50415415_50552151_F

Intron Information:

Intron Rank:

142626

Intron Class:

major

Intron Phase:

Intron Coordinates:

50415415 - 50552151

Intron Length:

136737

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGCTTT

5'SS Class:

strong_major

3'SS Sequence:

ATTTGTTTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATGAT

U12 Branch Point Sequence:

TGGTTTATGATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

0.9

76.6

34.9

Major BPS

84.6

0.86

41.2

Major PPT

86.6

0.82

0.8

81.1

35.9

Minor 5ss

44.5

-0.6

3.1

61.3

44.6

Minor BPS

49.7

0.06

1.5

67.44

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026868

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024391

50415010 - 50552979

137970