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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_50499456_50504332_F

Intron Information:

Intron Rank:
142632
Intron Class:
major
Intron Phase:
Intron Coordinates:
50499456 - 50504332
Intron Length:
4877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGGTTC
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCACAT
U12 Branch Point Sequence:
TCTGCCATAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
66.5
40
Major BPS
68.9
0.47
1
75
30
Major PPT
93.4
0.98
0.7
92.3
26.6
Minor 5ss
46.9
-0.3
3.1
58.6
46.3
Minor BPS
52.1
-0
1.9
61.5
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026868
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047484
50498763 - 50551194
52432