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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_50504740_50550874_F

Intron Information:

Intron Rank:
142633
Intron Class:
major
Intron Phase:
Intron Coordinates:
50504740 - 50550874
Intron Length:
46135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TCTCTATAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATCTCTATAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
70.5
0.46
1
66.6
37.6
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
56
0.17
1.7
66.93
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026868
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047484
50498763 - 50551194
52432