About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_50564355_50568608_F

Intron Information:

Intron Rank:
141451
Intron Class:
major
Intron Phase:
Intron Coordinates:
50564355 - 50568608
Intron Length:
4254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTTTTCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.4
30.3
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
96.1
1.04
0.5
91.7
19.5
Minor 5ss
34
-1.8
2.9
41.9
44.8
Minor BPS
77.1
0.85
1.5
87.01
30.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026171
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032433
50561476 - 50568937
7462