Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_50833695_50833887_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

50833695 - 50833887

Intron Length:

193

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGTGTTTC

5'SS Class:

strong_major

3'SS Sequence:

CTATGTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATATAT

U12 Branch Point Sequence:

TTTTCCTTACTA

Flanking Amino Acid:

RASVMWNRTQVVGILVGLGI

Intron Amino Acid Position:

306

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.8

80.1

28.5

Major BPS

71.4

0.53

67.3

39.3

Major PPT

80.4

0.68

0.9

77.1

36.9

Minor 5ss

45.4

-0.5

2.7

60.6

44.5

Minor BPS

78.5

0.89

1.5

87.11

31.6

Associated Gene:

Gene:

RNF144B

Ensembl Gene ID:

ENSAPLG00000006037

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033723

50833554 - 50883425

49872

ENSAPLT00000006271

50833554 - 50874379

40826