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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5089715_5089811_F

Intron Information:

Intron Rank:
128452
Intron Class:
major
Intron Phase:
Intron Coordinates:
5089715 - 5089811
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
AAATTATTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TGTTGCAAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
74.5
41.9
Major BPS
77.3
0.68
1
81.5
27
Major PPT
75.1
0.56
1
71
43.4
Minor 5ss
43.1
-0.8
2.9
54.7
43.7
Minor BPS
47.6
-0.1
2.3
73.42
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019174
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022783
5089551 - 5103519
13969