Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5089715_5103021_F

Intron Information:

Intron Rank:

128455

Intron Class:

major

Intron Phase:

Intron Coordinates:

5089715 - 5103021

Intron Length:

13307

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGCATG

5'SS Class:

strong_major

3'SS Sequence:

TTCCTTTAAAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTATTTTTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

74.5

41.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

64.4

0.32

1.1

35.8

Minor 5ss

43.1

-0.8

2.9

54.7

43.7

Minor BPS

0.99

87.98

30.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019174

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034346

5089522 - 5103519

13998