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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5090699_5100539_F

Intron Information:

Intron Rank:
128453
Intron Class:
major
Intron Phase:
Intron Coordinates:
5090699 - 5100539
Intron Length:
9841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGATTTTA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTAAT
U12 Branch Point Sequence:
TCTGCCTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
74.8
30.7
Major BPS
74.6
0.61
1.1
75.5
35.1
Major PPT
100
1.12
0.4
100
0
Minor 5ss
38.5
-1.3
2.9
46.3
44.2
Minor BPS
76.5
0.83
1.3
78.78
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019174
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022783
5089551 - 5103519
13969