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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_50930687_50931459_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50930687 - 50931459
Intron Length:
773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGACC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CACTTCTCATTT
Flanking Amino Acid:
KDFIKKTVKELIS*
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.9
36.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
84.2
0.77
0.8
81.5
28.8
Minor 5ss
32.9
-2
3.2
43.7
43.7
Minor BPS
47.3
-0.1
1.8
60.34
43.9

Associated Gene:

Gene:
DEK
Ensembl Gene ID:
ENSAPLG00000006721
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007007
50915410 - 50931551
16142