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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_50963600_50966094_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
50963600 - 50966094
Intron Length:
2495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGCC
5'SS Class:
strong_major
3'SS Sequence:
TATTCCCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.3
35.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.1
0.5
0.9
64.3
37.5
Minor 5ss
32.2
-2
3.3
41.8
45.1
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
KDM1B
Ensembl Gene ID:
ENSAPLG00000006476
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026285
50940362 - 50966620
26259