About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_50963600_50967119_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50963600 - 50967119
Intron Length:
3520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TATTCCCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
MPQVSNSTMSTGR
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
80.8
34.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.1
0.5
0.9
64.3
37.5
Minor 5ss
48.1
-0.2
2.8
68.1
42.7
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
KDM1B
Ensembl Gene ID:
ENSAPLG00000006476
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006731
50940362 - 50967130
26769