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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_50973166_50975282_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
50973166 - 50975282
Intron Length:
2117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTTACTCTT
5'SS Class:
weak_major
3'SS Sequence:
TCTTCTGTCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCACAC
U12 Branch Point Sequence:
GGGGCTACAGCT
Flanking Amino Acid:
DRPRLVNSLSIQKFVSSLIS
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.8
0.04
1.3
58.9
45.7
Major BPS
52.6
0.07
1.1
60.7
37.6
Major PPT
80.7
0.69
0.8
76.1
32.4
Minor 5ss
44.3
-0.6
2.9
66.4
38.1
Minor BPS
39
-0.7
1.9
50.67
43.1

Associated Gene:

Gene:
TPMT
Ensembl Gene ID:
ENSAPLG00000006294
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006561
50966589 - 50976258
9670