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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51058894_51059470_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51058894 - 51059470
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGCATTTTAAAG
Flanking Amino Acid:
NACIFAYGQTGSGKSFSMMG
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.6
0.82
0.6
85.9
21.2
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
51.2
-0.1
1.5
53.42
41.5

Associated Gene:

Gene:
KIF13A
Ensembl Gene ID:
ENSAPLG00000005320
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005610
50996873 - 51108705
111833
ENSAPLT00000024204
50996873 - 51108705
111833