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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51060762_51062069_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51060762 - 51062069
Intron Length:
1308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATCAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTGCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
TCATTTTCTACT
Flanking Amino Acid:
LSQLAVTNFEDIESLMSEGN
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
76.5
34.2
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
80.5
0.69
0.8
73.6
37
Minor 5ss
32.9
-2
3
40.7
45.5
Minor BPS
49
0
1.8
68.02
43

Associated Gene:

Gene:
KIF13A
Ensembl Gene ID:
ENSAPLG00000005320
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024204
50996873 - 51108705
111833
ENSAPLT00000005610
50996873 - 51108705
111833