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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51072282_51073422_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51072282 - 51073422
Intron Length:
1141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
ACTTATTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TGTCTCTTAGTA
Flanking Amino Acid:
LNELLVYYLKDHTRVGADTS
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
78
0.63
0.9
69.9
40.6
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
60.1
0.31
1.5
69.34
37

Associated Gene:

Gene:
KIF13A
Ensembl Gene ID:
ENSAPLG00000005320
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024204
50996873 - 51108705
111833
ENSAPLT00000005610
50996873 - 51108705
111833