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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51075376_51075478_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51075376 - 51075478
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGGTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTACACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AATTTTTTATTT
Flanking Amino Acid:
RILWGNNHFFRINLPKRKRR
Intron Amino Acid Position:
540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
78.8
35.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.8
0.69
0.9
76.8
36.1
Minor 5ss
35.2
-1.7
3.8
55.5
48.6
Minor BPS
60.9
0.42
1.5
74.66
36.6

Associated Gene:

Gene:
KIF13A
Ensembl Gene ID:
ENSAPLG00000005320
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005610
50996873 - 51108705
111833
ENSAPLT00000024204
50996873 - 51108705
111833