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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51075646_51081501_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51075646 - 51081501
Intron Length:
5856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATTTTCTCACAT
Flanking Amino Acid:
EVIMKTLNSNDPVQNVVQIL
Intron Amino Acid Position:
596

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
71
34.4
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
91.3
0.93
0.5
92.5
17.5
Minor 5ss
28.7
-2.4
3.5
34
43.2
Minor BPS
52.1
0.15
1.9
75.64
40.8

Associated Gene:

Gene:
KIF13A
Ensembl Gene ID:
ENSAPLG00000005320
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005610
50996873 - 51108705
111833
ENSAPLT00000024204
50996873 - 51108705
111833