About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5107789_5123387_F

Intron Information:

Intron Rank:
147935
Intron Class:
major
Intron Phase:
Intron Coordinates:
5107789 - 5123387
Intron Length:
15599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGATGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TAAACATGAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.4
23.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
73.3
0.52
0.9
70.5
40.9
Minor 5ss
41.2
-1
3
57.8
46.8
Minor BPS
47.6
-0.3
1.8
53.09
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029645
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031456
5107417 - 5124541
17125