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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51088358_51088910_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51088358 - 51088910
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTGA
5'SS Class:
major
3'SS Sequence:
TATCTTGCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GAGTGTTTATCT
Flanking Amino Acid:
AVPIISQQGEVAGRLHVEVM
Intron Amino Acid Position:
818

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
71.6
0.49
0.9
70
36.1
Minor 5ss
36.2
-1.6
3.2
47.7
47.7
Minor BPS
48.6
-0
2
65.44
45.2

Associated Gene:

Gene:
KIF13A
Ensembl Gene ID:
ENSAPLG00000005320
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005610
50996873 - 51108705
111833
ENSAPLT00000024204
50996873 - 51108705
111833