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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51089878_51090419_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51089878 - 51090419
Intron Length:
542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
GTCTCATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTGTCTCATTT
Flanking Amino Acid:
HYTVTFSHCQDYVVNVTEEF
Intron Amino Acid Position:
931

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.8
0.65
0.9
69.5
40.7
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
51.8
0.13
1.9
75.31
42.2

Associated Gene:

Gene:
KIF13A
Ensembl Gene ID:
ENSAPLG00000005320
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024204
50996873 - 51108705
111833
ENSAPLT00000005610
50996873 - 51108705
111833