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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51090572_51090680_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51090572 - 51090680
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAATA
5'SS Class:
major
3'SS Sequence:
TATACCTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAG
U12 Branch Point Sequence:
CAAGCATTAAGT
Flanking Amino Acid:
LHAKTRTLRDRWNEVTRRIE
Intron Amino Acid Position:
981

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1
75.8
33.1
Major BPS
55.5
0.14
1.5
65.3
38.6
Major PPT
77
0.61
0.8
74.2
36
Minor 5ss
42.5
-0.8
3
57.4
46.9
Minor BPS
47.9
-0
2
63.03
46.5

Associated Gene:

Gene:
KIF13A
Ensembl Gene ID:
ENSAPLG00000005320
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005610
50996873 - 51108705
111833
ENSAPLT00000024204
50996873 - 51108705
111833