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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51093757_51094635_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51093757 - 51094635
Intron Length:
879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTTCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GCCTTCTGTACT
Flanking Amino Acid:
GSGIPGAPANWIPPAGMETH
Intron Amino Acid Position:
1163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
72.1
33.4
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
86.7
0.82
0.8
84.6
36
Minor 5ss
46.7
-0.3
2.4
56
43.5
Minor BPS
49.2
0.02
1.8
64.83
45.4

Associated Gene:

Gene:
KIF13A
Ensembl Gene ID:
ENSAPLG00000005320
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024204
50996873 - 51108705
111833
ENSAPLT00000005610
50996873 - 51108705
111833