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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51096071_51097067_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51096071 - 51097067
Intron Length:
997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAATTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTGCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
CCTTTCTCCATT
Flanking Amino Acid:
LPIIKHSDEEVSATAAWDSS
Intron Amino Acid Position:
1224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
77.2
33.9
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
72.8
0.51
0.9
68.9
37.2
Minor 5ss
35.8
-1.6
3
49.7
46.6
Minor BPS
48.5
-0
2
66.82
44.9

Associated Gene:

Gene:
KIF13A
Ensembl Gene ID:
ENSAPLG00000005320
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005610
50996873 - 51108705
111833
ENSAPLT00000024204
50996873 - 51108705
111833