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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51102913_51107595_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51102913 - 51107595
Intron Length:
4683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TCCCACCCAACT
Flanking Amino Acid:
LESRPLLSQEDSEEEDSELE
Intron Amino Acid Position:
1495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
80.7
34.7
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
92
0.94
0.6
87.8
22.1
Minor 5ss
49.9
-0
2.8
73.7
42.8
Minor BPS
45.1
-0.2
2
63.7
45.8

Associated Gene:

Gene:
KIF13A
Ensembl Gene ID:
ENSAPLG00000005320
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024204
50996873 - 51108705
111833
ENSAPLT00000005610
50996873 - 51108705
111833