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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51115980_51117002_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51115980 - 51117002
Intron Length:
1023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTGAT
U12 Branch Point Sequence:
TGATCCCTGACG
Flanking Amino Acid:
AGSKHLLEIHGSLFKTRCTN
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
78.7
35.3
Major BPS
63.5
0.34
1.4
57.1
49.4
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
37
-1.5
3.3
48.9
41.6
Minor BPS
59.5
0.15
1.8
65.52
41.8

Associated Gene:

Gene:
SIRT5
Ensembl Gene ID:
ENSAPLG00000005125
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005306
51113756 - 51119233
5478