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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51119718_51119803_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51119718 - 51119803
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCCG
5'SS Class:
major
3'SS Sequence:
CCCCCTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
CCTTCCTGACGG
Flanking Amino Acid:
ERQLAGEAARRHRELLKEKR
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
57.9
46.7
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
70.5
0.46
0.7
64.4
24
Minor 5ss
29.7
-2.3
3.4
38.8
46.5
Minor BPS
45.8
-0.4
2.1
51.42
48.7

Associated Gene:

Gene:
NOL7
Ensembl Gene ID:
ENSAPLG00000005122
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005282
51116235 - 51123341
7107