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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51120053_51122051_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51120053 - 51122051
Intron Length:
1999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGCTG
5'SS Class:
major
3'SS Sequence:
TTTCTTTGAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTCTTTGAATA
Flanking Amino Acid:
EALLQELAAGRSKGNYTAMH
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
60.8
45.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
74.9
0.56
0.9
73.5
35.8
Minor 5ss
29.4
-2.4
3.4
39.3
46
Minor BPS
62.9
0.4
1.3
73.08
32.4

Associated Gene:

Gene:
NOL7
Ensembl Gene ID:
ENSAPLG00000005122
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005282
51116235 - 51123341
7107