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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51122171_51122249_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
51122171 - 51122249
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGGTATGC
5'SS Class:
weak_major
3'SS Sequence:
ATCTCCATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TGATGCTCATCT
Flanking Amino Acid:
HLYGPGTNRTTNEFFSLANK
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.4
0.13
1.1
49.5
36.3
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
78.2
0.63
0.9
74.5
34.3
Minor 5ss
33.2
-1.9
3.3
41
39.9
Minor BPS
47.7
-0
2.2
70.15
46.1

Associated Gene:

Gene:
NOL7
Ensembl Gene ID:
ENSAPLG00000005122
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005282
51116235 - 51123341
7107