Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51128439_51129526_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

51128439 - 51129526

Intron Length:

1088

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAATAAA

5'SS Class:

strong_major

3'SS Sequence:

CCTCTCATTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

TTTTTGTTCATT

Flanking Amino Acid:

SRSQQVNSYSSNDVDMETDH

Intron Amino Acid Position:

476

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.1

0.8

0.9

81.7

25.4

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

80.4

0.68

0.8

77.2

29.9

Minor 5ss

-2.4

2.7

32.7

42.2

Minor BPS

53.5

0.19

2.4

82.74

39.5

Associated Gene:

Gene:

RANBP9

Ensembl Gene ID:

ENSAPLG00000004706

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020061

51124724 - 51167332

42609

ENSAPLT00000004862

51124724 - 51164864

40141