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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51129675_51131298_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51129675 - 51131298
Intron Length:
1624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
AATTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
ATGATTTCAATT
Flanking Amino Acid:
TGKGSSTHFSGFESSCSNGV
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
78.6
0.71
1
78.6
31
Major PPT
84.8
0.78
0.8
81.8
34.9
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
51.5
0.12
1.5
66.56
38.8

Associated Gene:

Gene:
RANBP9
Ensembl Gene ID:
ENSAPLG00000004706
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020061
51124724 - 51167332
42609
ENSAPLT00000004862
51124724 - 51164864
40141