About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51131490_51132846_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51131490 - 51132846
Intron Length:
1357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
GTTGGCTTAACT
Flanking Amino Acid:
ERNPNLLFALKVRQFIEMVN
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
80.7
33.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
77.1
0.61
0.9
76.8
37.4
Minor 5ss
36.4
-1.5
3.2
50.5
40
Minor BPS
67.7
0.63
1.9
84.57
42.1

Associated Gene:

Gene:
RANBP9
Ensembl Gene ID:
ENSAPLG00000004706
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020061
51124724 - 51167332
42609
ENSAPLT00000004862
51124724 - 51164864
40141