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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51134413_51135148_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51134413 - 51135148
Intron Length:
736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
REGEWQTMIQKMVSSYLVHH
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.3
36.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.6
0.76
0.8
82.1
34.6
Minor 5ss
39.6
-1.2
3.3
57.8
40.6
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
RANBP9
Ensembl Gene ID:
ENSAPLG00000004706
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020061
51124724 - 51167332
42609
ENSAPLT00000004862
51124724 - 51164864
40141