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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51142106_51153691_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51142106 - 51153691
Intron Length:
11586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
TTTGTTTTTACA
Flanking Amino Acid:
EVKIVSKGRDGYMGIGLSAQ
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
81.8
38.5
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
44.9
-0.5
2.9
58.5
45.8
Minor BPS
60.3
0.32
1.7
74.12
37.8

Associated Gene:

Gene:
RANBP9
Ensembl Gene ID:
ENSAPLG00000004706
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020061
51124724 - 51167332
42609
ENSAPLT00000004862
51124724 - 51164864
40141