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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51204757_51206247_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51204757 - 51206247
Intron Length:
1491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAATC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TATGCAATAATA
Flanking Amino Acid:
EFSALRSENEKIKLELQQIK
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
81.4
30.4
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
87.2
0.84
0.8
80.5
37
Minor 5ss
37.4
-1.4
3.2
51.9
44.9
Minor BPS
49.8
-0
1.9
66.9
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030801
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036017
51204682 - 51210645
5964