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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51287105_51287224_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51287105 - 51287224
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTGTGCTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCACTTTTAAAT
Flanking Amino Acid:
AYALVVTLCNVWGLVHGAAV
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
68.8
42.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.2
0.66
0.9
72.8
37.5
Minor 5ss
32.2
-2
3.1
37.3
42.5
Minor BPS
59.9
0.39
1.4
70.96
39.9

Associated Gene:

Gene:
CD83
Ensembl Gene ID:
ENSAPLG00000020318
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035504
51286782 - 51299862
13081