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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51287105_51295558_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51287105 - 51295558
Intron Length:
8454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACATAT
U12 Branch Point Sequence:
TTGCCCACGACA
Flanking Amino Acid:
MMAGDGDGVAW
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
68.8
42.2
Major BPS
57.6
0.19
1
53
33.7
Major PPT
84.8
0.78
0.9
76.9
42.1
Minor 5ss
32.2
-2
3.1
37.3
42.5
Minor BPS
49.1
-0
1.9
65.69
40.3

Associated Gene:

Gene:
CD83
Ensembl Gene ID:
ENSAPLG00000020318
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001491
51287006 - 51298191
11186